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mikevoets / jama16-retina-replication

JAMA 2016; 316(22) Replication Study
https://doi.org/10.1371/journal.pone.0217541
MIT License
110 stars 35 forks source link

About the data #9

Closed mrzhangzizhen123 closed 5 years ago

mrzhangzizhen123 commented 5 years ago

Hello, professor I recently trying to reappear the your code, I met a problem, but before I kaggle downloaded DR data set, contains five seven training set and test set, but I put these data sets in eyepacs folder after running eyepacs. Sh extract only the training set, after running eyepacs. Sh is only a pool folder, inside a folder called "train" and a lot of pictures, but the train is empty inside.I only see one pool file when I run eyepacs.sh. Can you help me solve it?

mikevoets commented 5 years ago

Hi. Can you please send the exact command you used to run eyepacs.sh? Also, what platform are you using?

mrzhangzizhen123 commented 5 years ago

Thank you very much for your reply, the code has been running and the result is similar to yours, but the ROC curve drawing is not available. If I change the network on your code, such as Resnet, inceptipn-resnet, please give me some Suggestions.thank you.

mikevoets commented 5 years ago

The code does not generate a ROC curve drawing. You can save the specifity/sensitivity operating points to a file with the -so parameter, for example: python evaluate.py -so operating_points.csv. Then you can use the operating_points.csv file to draw a ROC curve.