search

mikewolfe / ChIPseq_pipeline

A general ChIP-seq pipeline to reproducibly process many samples at once.
0 stars 3 forks source link

Add ability to do summaries over regions or at specified locations #14

Closed mikewolfe closed 3 years ago

mikewolfe commented 3 years ago

Need ability to get gene-wise averages of ChIP signal or correctly oriented profiles at a given location +/- a specified number of bps. Could rely on deeptools functions to start:

https://deeptools.readthedocs.io/en/develop/content/tools/computeMatrix.html

Should compile these rules into a new workflow/postprocessing.smk module.