Add variant calling with `breseq` and NaN filters in summaries

mikewolfe / ChIPseq_pipeline

A general ChIP-seq pipeline to reproducibly process many samples at once.

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Closed mikewolfe closed 3 years ago

mikewolfe commented 3 years ago

A variant_calling module to call changes from the reference genome with ChIP input samples (#2)
Add option to control what fraction of a region can have NaNs in it and still report a summary value in bwtools query

mikewolfe commented 3 years ago

Closes issue #2