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mikolmogorov / Ragout

Chromosome-level scaffolding using multiple references
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output suggestion #54

Closed alantsangmb closed 4 years ago

alantsangmb commented 4 years ago

Do you think it is useful to add an option that users can combine the scaffolds and the unplaced contigs into a single fasta file instead of two separate files? Because I think the unplaced contigs are also useful for downstream analysis.

mikolmogorov commented 4 years ago

Combining these two outputs is a simple cat operation - I don't think there should be an extra option for that. Logically the contents of two files is very different.