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mikolmogorov / Ragout

Chromosome-level scaffolding using multiple references
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Ragout can read fasta files #7

Closed JessicaCruz31 closed 7 years ago

JessicaCruz31 commented 9 years ago

hi! I'm kind of a newbie, so maybe this is a silly problem, but I will ask anyway: I made the recipe file-.target = BacaeroM

BTT.fasta = references/BTT.fasta BTT2.fasta = references/BTT2.fasta BTo.fasta = references/BTo.fasta BacaeroM.fasta = BacaeroM.fasta

but after running the program I get this: [10:47:39] root: INFO: Starting Ragout v1.2 [10:47:39] root: ERROR: An error occured while running Ragout [10:47:39] root: ERROR: Could not open target FASTA file or it is not specified

Maybe its the path that has something missing, maybe not. Can anybody help?

mikolmogorov commented 9 years ago

Hi! Looks like it can not find the fasta file with assembly. Is it in the same directory with the recipe file?

JessicaCruz31 commented 9 years ago

Yes, the files are in the same directory, and yet it gives me the same error. What else can it be?

mikolmogorov commented 9 years ago

This looks strange. Do provided examples work for you? Could you also paste the recipe file in full (in one that you posted previously there is at least ".references" parameter missing)?