@AndrewRWilliams, so here's whatcha wanna do. You're going to want to setup a "test" dataset. The way you do this is by running twice: python src/covid19sim/run.py init_fraction_sick=0.05 INTERVENTION_DAY=1 simulation_days=10 tune=True intervention=heuristicv3
This should yield two output directories in output/ containing pickle files which contain tracker data. You're going to need to move these two seeds into a new directory called results/test/heuristicv3/. You may also wish to generate some more data with a different intervention, may I recommend intervention=bdt1, and then put those into results/test/bdt1/<name_of_folder_in_output>
Next, you run python src/covid19sim/plotting/main.py plot=qalys path=results/test. This will load the data and run src/covid19sim/plotting/plot_qalys.py. Now you get to compute some qalys in there.
If you need to generate additional data (not a bad idea if you add more stuff to tracker) then delete results/test/cache.pkl which is generated when you run the main.py plotscript. If you need additional information for the qalys and can't figure out how to extract it, just let me know and I can help grab it.
Description
@AndrewRWilliams, so here's whatcha wanna do. You're going to want to setup a "test" dataset. The way you do this is by running twice:
python src/covid19sim/run.py init_fraction_sick=0.05 INTERVENTION_DAY=1 simulation_days=10 tune=True intervention=heuristicv3This should yield two output directories in
output/containing pickle files which contain tracker data. You're going to need to move these two seeds into a new directory calledresults/test/heuristicv3/. You may also wish to generate some more data with a different intervention, may I recommendintervention=bdt1, and then put those intoresults/test/bdt1/<name_of_folder_in_output>Next, you run
python src/covid19sim/plotting/main.py plot=qalys path=results/test. This will load the data and runsrc/covid19sim/plotting/plot_qalys.py. Now you get to compute some qalys in there.If you need to generate additional data (not a bad idea if you add more stuff to tracker) then delete
results/test/cache.pklwhich is generated when you run the main.py plotscript. If you need additional information for the qalys and can't figure out how to extract it, just let me know and I can help grab it.