exportAirr clone_id - Githubissues

Januaryyiyue commented 1 year ago

Checklist before submitting the issue:

[x] The issue is strongly related to the MiXCR software
[ ] The issue can be reproduced with the most recent version of MiXCR
[x] There is no answer to the question in the official documentation and there is no duplicate issue in the bug tracker
[x] Inspection of raw alignments with exportAlignmentsPretty shows that data has the expected architecture, and sample preparation artefacts are not the reason of the problem (if this is the matter of the issue)

While using MiXCR exportAirr, I want to specify which fields to get, for example the clond_id field. But I do not know how to specify it.

There is no field called clone_id in the output

mixcr exportAirr --target -1 /path/to/assembly/file.clns /path/to/result/file.tsv

mizraelson commented 1 year ago

Hi, Currently we support only a fixed set of columns for AIRR export. We will add clone_id field upon your request in the upcoming release.

mizraelson commented 1 year ago

The field has been added in the latest develop version #1433.