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milaboratory / mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
https://mixcr.com
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MiXCR Built in Library #1553

Closed bshim181 closed 9 months ago

bshim181 commented 9 months ago

Hello,

I am currently aware that I can get list of V-gene/V-transcript sequences from MiXCR Gene Library. I was wondering if there is a way to access the reference points for each of the V gene features in the form of csv or tsv files. I would love to know the breakpoints for each of these gene features so I can possibly look at these features individually.

mizraelson commented 9 months ago

Hi, there is no way to export this in a table format from the library. The CDRs and FRs are only shown in the interface. If you have a dataset, and use mixcr to analyze it, you can export a germline sequence for different regions in the output using e.g.: -nFeature CDR2 germline parameter for exportClones.