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milaboratory / mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
https://mixcr.com
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Different separator for segment alignment score #228

Open iziziz opened 7 years ago

iziziz commented 7 years ago

depends on server localization ? e.g.

Clone ID    Clone count Clone fraction  Clonal sequence(s)  Clonal sequence quality(s)  All V hits  All D hits  All J hits  All C hits  All V alignments    All D alignments    All J alignments    All C alignments    N. Seq. FR1 Min. qual. FR1  N. Seq. CDR1    Min. qual. CDR1 N. Seq. FR2 Min. qual. FR2  N. Seq. CDR2    Min. qual. CDR2 N. Seq. FR3 Min. qual. FR3  N. Seq. CDR3    Min. qual. CDR3 N. Seq. FR4 Min. qual. FR4  AA. Seq. FR1    AA. Seq. CDR1   AA. Seq. FR2    AA. Seq. CDR2   AA. Seq. FR3    AA. Seq. CDR3   AA. Seq. FR4    Ref. points
0   36  0.00153302388962228 TGCGCCAGCAGCTTGCTGGGCGGGGATCTAGCTTTCTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII TRBV5-1*00(245.6)   TRBD1*00(25).TRBD2*00(25)   TRBJ1-1*00(185)     270|285|306|0|15||75.0  20|25|36|17|22||25.0;23|28|48|19|24||25.0   30|40|68|29|39||50.0                                                TGCGCCAGCAGCTTGCTGGGCGGGGATCTAGCTTTCTTT 40                              CASSLLGGDLAFF       :::::::::0::15:17::21:22:29::39:::

or 

Clone ID    Clone count Clone fraction  Clonal sequence(s)  Clonal sequence quality(s)  All V hits  All D hits  All J hits  All C hits  All V alignments    All D alignments    All J alignments    All C alignments    N. Seq. FR1 Min. qual. FR1  N. Seq. CDR1    Min. qual. CDR1 N. Seq. FR2 Min. qual. FR2  N. Seq. CDR2    Min. qual. CDR2 N. Seq. FR3 Min. qual. FR3  N. Seq. CDR3    Min. qual. CDR3 N. Seq. FR4 Min. qual. FR4  AA. Seq. FR1    AA. Seq. CDR1   AA. Seq. FR2    AA. Seq. CDR2   AA. Seq. FR3    AA. Seq. CDR3   AA. Seq. FR4    Ref. points
0   188 0.004346921316099794    TGTGCCATCAGTGAGTCGATTCCCACAGGCAGCACTGAAGCTTTCTTT    IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII    TRBV10-3*00(220,9)  TRBD1*00(25)    TRBJ1-1*00(214,9)       270|292|307|0|22|SC289T|96.0    15|20|36|24|29||25.0    24|40|68|32|48||80.0                                                TGTGCCATCAGTGAGTCGATTCCCACAGGCAGCACTGAAGCTTTCTTT    40                              CAISESIPTGSTEAFF        :::::::::0:17:22:24:::29:32::48:::

MiXCR v2.0.2

Computer 1 - Windows Computer 2 - Ubuntu

dbolotin commented 7 years ago

Moved to major 2.2 because changes output format.