Fix documentation - Githubissues

milaboratory / mixcr

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

https://mixcr.com

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Fix documentation #38

Closed PoslavskySV closed 8 years ago

PoslavskySV commented 8 years ago

add options --filter-out-of-frames and --filter-stops to export
rename -presetFile with preset-file in export
rename -listFields with list-fields in export
add description for --save-reads in align
add description for --index in assemble
add info on possibility to add JVM args mixcr -Xmx2g align ...
add description for clones <-> reads mapping (export fields, new actions etc.)

PoslavskySV commented 8 years ago

--vHitsWithoutScore -> -vHitsWithoutScore in export