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milanetf / variant_calling

Variant calling algorithm implemented in Python
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Input to variant_calling should be pileup file #6

Open vladimirkovacevic opened 6 years ago

vladimirkovacevic commented 6 years ago

What do you get with -v what with -vch? It is really hard for me to understand to flow of the code. Can you make it more understandable and user friendly?

milanetf commented 6 years ago

With next command we can execute variant calling: ../variant_calling.py -v path_to_pileup, where path_to_pileup is relative path with regard to folder which contains variant_calling.py scrypt.