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mildpiggy / DEP2

An r package for proteomics data Analysis, developed from DEP.
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Error in get_signicant #2

Closed gremame closed 7 months ago

gremame commented 9 months ago

Hello! I'm using DEP2 version 0.5.2.28 and I have been getting an error when using the get_signicant function:

Error in get_signicant(object, contrast = manual_contrast) :
promise already under evaluation: recursive default argument reference or earlier problems?

Initially I thought it could be a problem with my data or that I wasn't using the function properly. However, I followed the DEP2 analysis workflow tutorial and got the same error when calling with get_signicant function with the data from the vignette. Let me know if you need me to provide you with additional information regarding this issue. Bests and congrats for the tool, I love how well documented everything is!

mildpiggy commented 8 months ago

Welcome to raise this issue, I apologize for taking so long to see and respond. This problem did indeed exist in the early versions of Version 0.5.2.28, and we fixed it in the last [commit ]((https://github.com/mildpiggy/DEP2/commit/e2cce58010876323546a2d54a93c426869b980bc). However, I cannot be entirely sure if the error you encountered was caused by the problem we fixed at that time.

If you installed DEP2 more than 3 weeks ago, I suggest you reinstall the latest version and try again, which theoretically should solve the error. But if you continue to encounter issues, I hope you can provide more data details.

gremame commented 7 months ago

Thanks for the update, I installed the latest version and now the get_signicant as well as the plot_heatmap function are working with no issues. Thanks a lot! :muscle: