Closed milkschen closed 10 months ago
When --preserve_breakpoint is set to True, chaintools.to_paf() preserves all breakpoints.
--preserve_breakpoint
True
chaintools.to_paf()
Example: The gap specified by 149 341 2894 would be converted to 149M2894I341D with --preserve_breakpoint. Without the option, it is converted to 149M341X2553I
149 341 2894
149M2894I341D
149M341X2553I
When
--preserve_breakpointis set toTrue,chaintools.to_paf()preserves all breakpoints.Example: The gap specified by
149 341 2894would be converted to149M2894I341Dwith--preserve_breakpoint. Without the option, it is converted to149M341X2553I