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milkschen / chaintools

Utilities for the genomic chain format
MIT License
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Addition of to_vcf.py converter with tests #2

Closed nhansen closed 2 years ago

nhansen commented 2 years ago

The "to_vcf.py" script creates a VCF file (with the source genome as reference) with variants that convert source to target within the chains in the specified chain file. Source and reference fasta files are required.