millanek / Dsuite

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
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use Dquartets still need 'Outgroup' #66

Closed yangfty closed 1 year ago

yangfty commented 1 year ago

I want to use Dsuite Dquartets to try to find all possibilities, but I provided 8 species and the program keeps reporting an error indicating that Outgroup is required (ERROR: The file test2.txt needs to specify the "Outgroup"), I'm not sure what's wrong, I see that the help indicates that Outgroup is not required in Dsuite Dquartets.

test2.txt ( | equals tab) : A-1 | Species1 B-2 | Species2 C-3 | Species3 C-4 | Species3 C-5 | Species3 C-6 | Species3 C-7 | Species3 C-8 | Species3 D-9 | Species4 D-10 | Species4 D-11 | Species4 D-12 | Species4 D-13 | Species4 D-14 | Species4 E-15 | Species5 E-16 | Species5 E-17 | Species5 E-18 | Species5 E-19 | Species5 E-20 | Species5 E-21 | Species5 F-22 | Species6 F-23 | Species6 F-24 | Species6 F-25 | Species6 F-26 | Species6 F-27 | Species6 G-28 | Species7 G-29 | Species7 G-30 | Species7 G-31 | Species7 G-32 | Species7 G-33 | Species7 H-34 | Species8 H-35 | Species8 H-36 | Species8 H-37 | Species8 H-38 | Species8 H-39 | Species8

millanek commented 1 year ago

Hi yangfty

This should be fixed now. Thanks for reporting.

Milan