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millanek / Dsuite

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
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output file：There is no result in the output file, it is blank #73

Open yangwukaidi opened 1 year ago

yangwukaidi commented 1 year ago

Hi. I have encountered a tricky problem when running the Dquartets of this software, that is, the output file is incomplete. I have 118 individuals, divided into four groups. SETS.txt： 1684917751117 VCF: 1684917873640 The command line as follows: ./Build/Dsuite Dquartets 0327.all.LDfilter.new.vcf SETS.txt But, the contents of the output files are as follows:

SETS_quartets_BBAA.txt P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA SETS_quartets_combine.txt HNHZ QBZ YZ 489483 542000 467119 75223.6 -16460.8 40546 150106 5909.82 93048.4 SETS_quartets_combine_stderr.txt -0.0873817,-0.10146,-0.06144,-0.0810196,-0.0457916,-0.0574427,-0.0577613,-0.0717437,-0.0698439,-0.0957624,-0.0655952,-0.0784896,-0.0841272,-0.0634347,-0.0640111,-0.0757899, ... SETS_quartets_Dmin.txt P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA

How can I solve this problem? Looking forward to your reply!

yangwukaidi commented 1 year ago

Sorry, I should add that the following is also returned after the command is run: 1684918493730

yangwukaidi commented 1 year ago

I tried using the sample data you provided, and the output file remains the same. I still can't figure out what went wrong.

wuyh0328 commented 8 months ago

Excuse me, I also encountered the same problem. Have you solved your problem?

yangwukaidi commented 4 months ago

I haven't solved the problem yet. Do you have a solution now?