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millanek / Dsuite

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
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Dquartets Output error in Dsuite #78

Open ashnareyaz opened 1 year ago

ashnareyaz commented 1 year ago

Hello , I have been trying to use Dquartets and though everything worked fine and the program ran successfully but on completion the output files just had the heading-[P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA] and no data . My SETS.txt file did not have any sample mentioned with Outgroup keyword , also it had 5 species with sample id and species id being tab separated. I'm not sure what went wrong, If you could please help me in this regard.

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yangwukaidi commented 1 year ago

hello, I have the same problem as you. Do you have a solution for it?

jqrichmond commented 1 year ago

Same issue with me, exactly. This seems to be a bug. If anybody can give us a hand, I'd appreciate it. Thanks.

wuyh0328 commented 11 months ago

I also encountered the same problem. Have you solved your problem?

jqrichmond commented 11 months ago

No, I had to give up and move on. I spent as much time as I could trying to figure it out.

ShaolinXU commented 4 months ago

Try commit: 4d7671c

git clone ...
cd Dsuite
git checkout 4d7671c
make

Then run Dquartets as you want,

jqrichmond commented 4 months ago

Yes, thank you. I did this a while back and was able to run it no problem. Apologies – I thought I had commented on the github that I was able to get it to run using the update. -Jonathan

Jonathan Richmond, PhD U.S. Geological Survey 4165 Spruance Rd. Suite 200 San Diego CA 92101 Phone: 619-225-6434 https://www.researchgate.net/profile/Jonathan-Richmond

From: Shaolin Xu @.> Date: Saturday, July 20, 2024 at 1:50 PM To: millanek/Dsuite @.> Cc: Richmond, Jonathan Q @.>, Comment @.> Subject: [EXTERNAL] Re: [millanek/Dsuite] Dquartets Output error in Dsuite (Issue #78)

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Try commit: 4d7671chttps://github.com/millanek/Dsuite/commit/4d7671c34709b84ec96fd1df27b2a3093388e8e3

git clone ...

cd Dsuite

git checkout 4d7671c

make

Then run Dquartets as you want,

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