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millanek / Dsuite

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
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--abbaclustering with DtriosParallel #94

Open RSchley opened 5 months ago

RSchley commented 5 months ago

First off, thanks so much for developing this amazing tool. The DtriosParallel option is particularly helpful for use with per-chromosome vcf files, and so I was wondering whether there is (or will be) an implementation of DtriosParallel that includes the new --abbaclustering option?

Thanks a lot! Rowan

RSchley commented 4 months ago

Alternatively, is there a way to specify trios for --abbaclustering analysis, because it takes quite a lot longer than regular Dtrios when running for all my 190 species. Thanks!