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millanp95 / DeLUCS

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
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EvaluateDeLUCS.py #4

Open gaushi opened 3 years ago

gaushi commented 3 years ago

Hi, Thanks for developing this tool! While running EvaluateDeLUCS.py on test files (test 1) I got following error message:

*Traceback (most recent call last): File "EvaluateDeLUCS.py", line 3, in import torch File "/src/python3/envs/delucs/lib/python3.7/site-packages/torch/init.py", line 84, in from torch._C import ImportError: /src/python3/envs/delucs/lib/python3.7/site-packages/torch/lib/libmkldnn.so.0: undefined symbol: cblas_sgemm_alloc**

I tried to install mkl with intel (through conda install) and I am still getting the same error message.

Thanks, Best regards, Gautam

millanp95 commented 3 years ago

Hi Gautam,

I would recommend a clean installation of PyTorch through pip. Let me know if that does not help and we can troubleshoot further.

Pablo

gaushi commented 3 years ago

Hi Pablo, Thanks for the tip. I did the clean installation of PyTorch through pip. Now everything works!!. You can close the issue :)

Best, Gautam