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mims-harvard / G-Meta

Graph meta learning via local subgraphs (NeurIPS 2020)
https://zitniklab.hms.harvard.edu/projects/G-Meta
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No module named 'dgl.graph' #6

Open songsong0425 opened 2 years ago

songsong0425 commented 2 years ago

Dear G-Meta team,

Greetings, I counted the problem on dgl package. When I tried to open the dgl_graph.pkl file, ModuleNotFoundError: No module named 'dgl.graph' problem evoked while I matched the conda virtual environment setting to your requirements. Although I searched the above error comment, I couldn't find the proper solution. Can you give any suggestions or results after running dgl_graph.pkl file? I'm sorry for bothering you and look forward to your reply.

Best,

LikeGiver commented 2 years ago

I met with the same problem and tried to change the version to 'dgl == 0.4.3post2',then I fix it!

here is my environment:

Name Version Build Channel anyio 3.5.0 py38haa95532_0 defaults argon2-cffi 21.3.0 pyhd3eb1b0_0 defaults argon2-cffi-bindings 21.2.0 py38h2bbff1b_0 defaults asttokens 2.0.5 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main attrs 21.4.0 pyhd3eb1b0_0 defaults babel 2.9.1 pyhd3eb1b0_0 defaults backcall 0.2.0 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main beautifulsoup4 4.11.1 py38haa95532_0 defaults blas 1.0 mkl defaults bleach 4.1.0 pyhd3eb1b0_0 defaults brotlipy 0.7.0 py38h2bbff1b_1003 defaults ca-certificates 2022.07.19 haa95532_0 defaults certifi 2022.9.24 py38haa95532_0 defaults cffi 1.15.1 py38h2bbff1b_0 defaults charset-normalizer 2.1.0 pypi_0 pypi colorama 0.4.5 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main cryptography 37.0.1 py38h21b164f_0 defaults

cudatoolkit 10.2.89 h74a9793_1 defaults

cycler 0.11.0 pypi_0 pypi debugpy 1.5.1 py38hd77b12b_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main decorator 5.1.1 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main defusedxml 0.7.1 pyhd3eb1b0_0 defaults

dgl-cuda10.2 0.4.3post2 py38_0 dglteam

entrypoints 0.4 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main executing 0.8.3 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main fftw 3.3.9 h2bbff1b_1 defaults fonttools 4.34.4 pypi_0 pypi freetype 2.10.4 hd328e21_0 defaults geatpy 2.7.0 pypi_0 pypi glib 2.69.1 h5dc1a3c_1 defaults gst-plugins-base 1.18.5 h9e645db_0 defaults gstreamer 1.18.5 hd78058f_0 defaults hanlp-downloader 0.0.25 pypi_0 pypi icc_rt 2022.1.0 h6049295_2 defaults icu 58.2 ha925a31_3 defaults idna 3.3 pypi_0 pypi importlib-metadata 4.11.3 py38haa95532_0 defaults importlib_resources 5.2.0 pyhd3eb1b0_1 defaults intel-openmp 2021.4.0 haa95532_3556 defaults ipykernel 6.9.1 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main ipython 8.4.0 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main ipython_genutils 0.2.0 pyhd3eb1b0_1 defaults ipywidgets 7.6.5 pyhd3eb1b0_1 defaults jedi 0.18.1 py38haa95532_1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main jinja2 3.0.3 pyhd3eb1b0_0 defaults jpeg 9e h2bbff1b_0 defaults jpype1 0.7.0 pypi_0 pypi json5 0.9.6 pyhd3eb1b0_0 defaults jsonschema 4.16.0 py38haa95532_0 defaults jupyter 1.0.0 py38haa95532_8 defaults jupyter_client 7.2.2 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main jupyter_console 6.4.3 pyhd3eb1b0_0 defaults jupyter_core 4.10.0 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main jupyter_server 1.18.1 py38haa95532_0 defaults jupyterlab 3.4.4 py38haa95532_0 defaults jupyterlab_pygments 0.1.2 py_0 defaults jupyterlab_server 2.15.2 py38haa95532_0 defaults jupyterlab_widgets 1.0.0 pyhd3eb1b0_1 defaults kiwisolver 1.4.4 pypi_0 pypi lerc 3.0 hd77b12b_0 defaults libclang 12.0.0 default_h627e005_2 defaults libdeflate 1.8 h2bbff1b_5 defaults libffi 3.4.2 hd77b12b_4 defaults libiconv 1.16 h2bbff1b_2 defaults libogg 1.3.5 h2bbff1b_1 defaults libpng 1.6.37 h2a8f88b_0 defaults libsodium 1.0.18 h62dcd97_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main libtiff 4.4.0 h8a3f274_0 defaults libuv 1.40.0 he774522_0 defaults libvorbis 1.3.7 he774522_0 defaults libwebp 1.2.4 h2bbff1b_0 defaults libwebp-base 1.2.4 h2bbff1b_0 defaults libxml2 2.9.14 h0ad7f3c_0 defaults libxslt 1.1.35 h2bbff1b_0 defaults lz4-c 1.9.3 h2bbff1b_1 defaults markupsafe 2.1.1 py38h2bbff1b_0 defaults matplotlib 3.5.2 pypi_0 pypi matplotlib-inline 0.1.2 pyhd3eb1b0_2 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main memory_profiler 0.58.0 pyhd3eb1b0_0 defaults mistune 0.8.4 py38he774522_1000 defaults mkl 2021.4.0 haa95532_640 defaults mkl-service 2.4.0 py38h2bbff1b_0 defaults mkl_fft 1.3.1 py38h277e83a_0 defaults mkl_random 1.2.2 py38hf11a4ad_0 defaults nbclassic 0.3.5 pyhd3eb1b0_0 defaults nbclient 0.5.13 py38haa95532_0 defaults nbconvert 6.4.4 py38haa95532_0 defaults nbformat 5.5.0 py38haa95532_0 defaults nest-asyncio 1.5.5 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main networkx 2.8.4 py38haa95532_0 defaults notebook 6.4.12 py38haa95532_0 defaults numpy 1.23.1 pypi_0 pypi numpy-base 1.23.3 py38h4da318b_0 defaults openssl 1.1.1q h2bbff1b_0 defaults packaging 21.3 pyhd3eb1b0_0 defaults pandocfilters 1.5.0 pyhd3eb1b0_0 defaults parso 0.8.3 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pcre 8.45 hd77b12b_0 defaults pickleshare 0.7.5 pyhd3eb1b0_1003 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pillow 9.2.0 pypi_0 pypi pip 22.1.2 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pkgutil-resolve-name 1.3.10 py38haa95532_0 defaults ply 3.11 py38_0 defaults prometheus_client 0.14.1 py38haa95532_0 defaults prompt-toolkit 3.0.20 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main prompt_toolkit 3.0.20 hd3eb1b0_0 defaults psutil 5.9.0 py38h2bbff1b_0 defaults pure_eval 0.2.2 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pycparser 2.21 pyhd3eb1b0_0 defaults pygments 2.11.2 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pyhanlp 0.1.84 pypi_0 pypi pyopenssl 22.0.0 pyhd3eb1b0_0 defaults pyparsing 3.0.9 py38haa95532_0 defaults pyqt 5.15.7 py38hd77b12b_0 defaults pyqt5-sip 12.11.0 py38hd77b12b_0 defaults pyrsistent 0.18.0 py38h196d8e1_0 defaults pysocks 1.7.1 py38haa95532_0 defaults python 3.8.13 h6244533_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main python-dateutil 2.8.2 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main python-fastjsonschema 2.16.2 py38haa95532_0 defaults

pytorch 1.12.1 py3.8_cpu_0 pytorch

pytorch-mutex 1.0 cpu pytorch pytz 2022.1 py38haa95532_0 defaults pywin32 302 py38h2bbff1b_2 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main pywinpty 2.0.2 py38h5da7b33_0 defaults pyzmq 23.2.0 py38hd77b12b_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main qt-main 5.15.2 he8e5bd7_4 defaults qt-webengine 5.15.9 hb9a9bb5_4 defaults qtconsole 5.3.2 py38haa95532_0 defaults qtpy 2.2.0 py38haa95532_0 defaults qtwebkit 5.212 h3ad3cdb_4 defaults requests 2.28.1 py38haa95532_0 defaults scipy 1.9.1 py38he11b74f_0 defaults send2trash 1.8.0 pyhd3eb1b0_1 defaults setuptools 61.2.0 py38haa95532_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main sip 6.6.2 py38hd77b12b_0 defaults six 1.16.0 pyhd3eb1b0_1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main sniffio 1.2.0 py38haa95532_1 defaults soupsieve 2.3.1 pyhd3eb1b0_0 defaults sqlite 3.38.5 h2bbff1b_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main stack_data 0.2.0 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main terminado 0.13.1 py38haa95532_0 defaults testpath 0.6.0 py38haa95532_0 defaults tk 8.6.12 h2bbff1b_0 defaults toml 0.10.2 pyhd3eb1b0_0 defaults torchvision 0.13.1 py38_cpu pytorch tornado 6.1 py38h2bbff1b_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main tqdm 4.64.1 py38haa95532_0 defaults traitlets 5.1.1 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main typing-extensions 4.3.0 py38haa95532_0 defaults typing_extensions 4.3.0 py38haa95532_0 defaults urllib3 1.26.11 py38haa95532_0 defaults vc 14.2 h21ff451_1 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main vs2015_runtime 14.27.29016 h5e58377_2 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main wcwidth 0.2.5 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main webencodings 0.5.1 py38_1 defaults websocket-client 0.58.0 py38haa95532_4 defaults wheel 0.37.1 pyhd3eb1b0_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main widgetsnbextension 3.5.2 py38haa95532_0 defaults win_inet_pton 1.1.0 py38haa95532_0 defaults wincertstore 0.2 py38haa95532_2 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main winpty 0.4.3 4 defaults xz 5.2.6 h8cc25b3_0 defaults zeromq 4.3.4 hd77b12b_0 https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main zipp 3.8.0 py38haa95532_0 defaults zlib 1.2.12 h8cc25b3_3 defaults zstd 1.5.2 h19a0ad4_0 defaults

and I think the main problem is your dgl version and you need to choose the proper cuda version

（my pytorch verison is wrong and I could only run the code on cpu, don't follow me)

lihuiliullh commented 1 year ago

I have the same problem.

usertianqin commented 12 months ago

i have the same problem too.