mims-harvard / TDC

Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science
https://tdcommons.ai
MIT License
984 stars 173 forks source link

New Data: data loader for cisTarget database #276

Open abearab opened 4 months ago

abearab commented 4 months ago

Describe the problem TF-target interaction is a missing opportunity as Multi-Instance Prediction.

Describe the solution you'd like SCENIC+ / pySCENIC already has a well described resource https://resources.aertslab.org/cistarget/databases/

Additional context This data is important several downstream tasks and inclusion of the data in TDC can be very useful.

abearab commented 3 months ago

cc @ghuls