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mims-harvard / TDC

Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science
https://tdcommons.ai
MIT License
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geneformer tokenizer fails on scperturb datasets #324

Open amva13 opened 1 month ago

amva13 commented 1 month ago

https://github.com/mims-harvard/TDC/tree/geneformer_server

amva13 commented 3 weeks ago

update - works totally OK for general anndata frame. need some custom processing code for scperturb. doable in next few weeks.

https://github.com/mims-harvard/TDC/blob/2daa6ca4f7a0f658f51f6b34351b424f477b498b/tdc/test/test_model_server.py#L103