minepy / mictools

A practical tool for Maximal Information Coefficient (MIC) analysis
GNU General Public License v3.0
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Exceptions #8

Closed Jediworm closed 4 years ago

Jediworm commented 4 years ago

Hello, I'm following the docker install and usage instructions:

docker pull minepy/mictools docker run --rm -t -i -v /Users/will/Documents/mictools:/mictools -w /mictools minepy/mictools /bin/bash

But when running any commands, I get this below message:

raceback (most recent call last): File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 655, in _build_master ws.require(requires) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 963, in require needed = self.resolve(parse_requirements(requirements)) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 854, in resolve raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (numpy 1.12.1 (/usr/lib/python3/dist-packages), Requirement.parse('numpy>=1.14'), {'statsmodels'})

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/usr/local/bin/mictools", line 6, in from pkg_resources import load_entry_point File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 3019, in @_call_aside File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 3003, in _call_aside f(*args, **kwargs) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 3032, in _initialize_master_working_set working_set = WorkingSet._build_master() File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 657, in _build_master return cls._build_from_requirements(requires) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 670, in _build_from_requirements dists = ws.resolve(reqs, Environment()) File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 854, in resolve raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (numpy 1.12.1 (/usr/lib/python3/dist-packages), Requirement.parse('numpy>=1.14'), {'statsmodels'})

Is this a problem with the python version? I am running 2.7.16, but I thought the docker image included python3?

Thanks for your help!

davidealbanese commented 4 years ago

Fixed in https://github.com/minepy/mictools/commit/cb7908d03d87c3a764b9fa520217fde6df2acb12.