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mini-pw / PvSTATEM

R package for automated analysis of serological data
https://mini-pw.github.io/PvSTATEM/
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plots of plate - counts and layout #71

Closed nizwant closed 2 months ago

nizwant commented 2 months ago
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nizwant commented 2 months ago

I have encountered errors while running the check.

❯ checking examples ... ERROR
  Running examples in ‘PvSTATEM-Ex.R’ failed
  The error most likely occurred in:

  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: Model
  > ### Title: Logisic regresion model for the standard curve
  > ### Aliases: Model
  >
  > ### ** Examples
  >
  > plate_file <- system.file("extdata", "CovidOISExPONTENT.csv", package = "PvSTATEM")
  > layout_file <- system.file("extdata", "CovidOISExPONTENT_layout.csv", package = "PvSTATEM")
  > plate <- read_luminex_data(plate_file, layout_filepath = layout_file, dilutions_from = "layout")
  Error in read_luminex_data(plate_file, layout_filepath = layout_file,  :
    unused argument (dilutions_from = "layout")
  Execution halted

I guess the error is connected to #80, where we got rid of the dilutions_from argument. Can you give me more context so I can recreate the error you encountered?

Fersoil commented 2 months ago

I have encountered errors while running the check.

❯ checking examples ... ERROR
  Running examples in ‘PvSTATEM-Ex.R’ failed
  The error most likely occurred in:

  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: Model
  > ### Title: Logisic regresion model for the standard curve
  > ### Aliases: Model
  >
  > ### ** Examples
  >
  > plate_file <- system.file("extdata", "CovidOISExPONTENT.csv", package = "PvSTATEM")
  > layout_file <- system.file("extdata", "CovidOISExPONTENT_layout.csv", package = "PvSTATEM")
  > plate <- read_luminex_data(plate_file, layout_filepath = layout_file, dilutions_from = "layout")
  Error in read_luminex_data(plate_file, layout_filepath = layout_file,  :
    unused argument (dilutions_from = "layout")
  Execution halted

I guess the error is connected to #80, where we got rid of the dilutions_from argument. Can you give me more context so I can recreate the error you encountered?

it should no longer be an issue after the merge with the feat/refactor branch