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minoh0201 / DeepMicro

Deep representation learning for disease prediction based on microbiome data
MIT License
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AttributeError: 'str' object has no attribute 'decode' #2

Open ghost opened 2 years ago

ghost commented 2 years ago

Hello,I was trying to reproduce the experiments described in the paper from the given data. command: python DM.py -r 1 -cd UserDataExample.csv -cl UserLabelExample.csv -m svm

I got these errors

Epoch 00328: early stopping Traceback (most recent call last): File "DM.py", line 718, in run_exp(args.seed) File "DM.py", line 660, in run_exp latent_act=args.ae_lact, output_act=args.ae_oact, patience=args.patience, no_trn=args.no_trn) File "DM.py", line 216, in ae self.autoencoder = load_model(modelName) File "/home/ubuntu/anaconda3/envs/deep_env/lib/python3.6/site-packages/keras/engine/saving.py", line 419, in load_model model = _deserialize_model(f, custom_objects, compile) File "/home/ubuntu/anaconda3/envs/deep_env/lib/python3.6/site-packages/keras/engine/saving.py", line 224, in _deserialize_model model_config = json.loads(model_config.decode('utf-8')) AttributeError: 'str' object has no attribute 'decode'.

How can I solve it? Thank you.

gkrisp98 commented 2 years ago

I got the same errors when trying to use Deep Micro for mine dataset. Were you able to solve it ?

paulzierep commented 1 year ago

I think the problem is the h5py version: https://stackoverflow.com/questions/53740577/does-any-one-got-attributeerror-str-object-has-no-attribute-decode-whi Using pip install h5py==2.10.0 --force-reinstall worked for me.