Configuration file must be copied into the src directory

[mosoriob]

If a user selects a file as a configuration file, then the file must be copied into the src directory because it contains the variable.

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[Cmheidelberg]

mic wrapper already copies any config files (defined by configs command) into the src folder.

chris@chris-ubuntu20:/home/chris/Desktop/tests/configTest  (master)$ mic encapsulate configs config.json 
Automatically found mic.yaml in /home/chris/Desktop/tests/configTest/mic/mic.yaml
Added: /home/chris/Desktop/tests/configTest/config.json as a configuration file

chris@chris-ubuntu20:/home/chris/Desktop/tests/configTest  (master)$ mic encapsulate wrapper
Automatically found mic.yaml in /home/chris/Desktop/tests/configTest/mic/mic.yaml
Generating the MIC Wrapper. This generates the directory structure and commands required to run your model
Copying the code: linemodel.py to the MIC Wrapper directory mic/src
Copying the config: config.json to the MIC Wrapper directory mic/src
Success
The wrapper has been generated. You can see it at /home/chris/Desktop/tests/configTest/mic/src/run
The next step is `mic encapsulate run`
The command run is going to create a new directory (execution directory), and MIC is going the inputs, code, and configuration files and run the model.
For more information, you can type.
mic encapsulate run --help

chris@chris-ubuntu20:/home/chris/Desktop/tests/configTest  (master)$ tree
.
├── config.json
├── LICENSE
├── linemodel.py
├── mic
│   ├── data
│   │   ├── config.json
│   │   └── x.csv
│   ├── docker
│   │   ├── Dockerfile
│   │   ├── entrypoint.sh
│   │   └── requirements.txt
│   ├── mic.yaml
│   └── src
│       ├── config.json
│       ├── io.sh
│       ├── linemodel.py
│       ├── output.sh
│       └── run
├── README.md
├── results
│   └── y.csv
└── x.csv

5 directories, 17 files

[mosoriob]

Wow. The swat model configuration is outdated Thanks

On Mon, Jul 13, 2020, 3:33 PM Christopher Heidelberg < notifications@github.com> wrote:

mic wrapper already copies any config files (defined by configs command) into the src folder.

chris@chris-ubuntu20:/home/chris/Desktop/tests/configTest (master)$ mic encapsulate configs config.json

Automatically found mic.yaml in /home/chris/Desktop/tests/configTest/mic/mic.yaml

Added: /home/chris/Desktop/tests/configTest/config.json as a configuration file

chris@chris-ubuntu20:/home/chris/Desktop/tests/configTest (master)$ mic encapsulate wrapper

Automatically found mic.yaml in /home/chris/Desktop/tests/configTest/mic/mic.yaml

Generating the MIC Wrapper. This generates the directory structure and commands required to run your model

Copying the code: linemodel.py to the MIC Wrapper directory mic/src

Copying the config: config.json to the MIC Wrapper directory mic/src

Success

The wrapper has been generated. You can see it at /home/chris/Desktop/tests/configTest/mic/src/run

The next step is mic encapsulate run

The command run is going to create a new directory (execution directory), and MIC is going the inputs, code, and configuration files and run the model.

For more information, you can type.

mic encapsulate run --help

chris@chris-ubuntu20:/home/chris/Desktop/tests/configTest (master)$ tree

.

├── config.json

├── LICENSE

├── linemodel.py

├── mic

│ ├── data

│ │ ├── config.json

│ │ └── x.csv

│ ├── docker

│ │ ├── Dockerfile

│ │ ├── entrypoint.sh

│ │ └── requirements.txt

│ ├── mic.yaml

│ └── src

│ ├── config.json

│ ├── io.sh

│ ├── linemodel.py

│ ├── output.sh

│ └── run

├── README.md

├── results

│ └── y.csv

└── x.csv

5 directories, 17 files

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