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mirand863 / hitac

BSD 3-Clause "New" or "Revised" License
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pre-trained classifier issue #24

Open pavlo888 opened 3 months ago

pavlo888 commented 3 months ago

Hi,

I am interested in using this new fungal classifier. I am trying to run the classifier on Qiime2. It is mentioned here https://github.com/mirand863/hitac?tab=readme-ov-file#pre-trained-models that there are pre-trained models, amazing! However, when I go to the link, I only find the reference reads and reference taxonomy file inputs to be used to actually train a classifier. Is this alright?

I was expecting a ready-to-use classifier as here https://github.com/colinbrislawn/unite-train/releases/tag/v10.0-v04.04.2024-qiime2-2024.5

Am I correct in thinking that I have to train the classifier myself with the input you provide or am I missing something?

mirand863 commented 3 months ago

Hi @pavlo888,

Thank you for the interest in HiTaC.

When I click on the links they redirect me to zenodo, e.g., https://zenodo.org/records/10812410. The links on zenodo have .qza files similar to the ones in the link from colinbrislawn. Which input files are you seeing?

Best, Fabio