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miriammiyagi / QuIBL

Quantifying Introgression via Branch Lengths
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Question about whether single copy gene trees can be used as the input of QuIBL #28

Open tanwei123456 opened 1 year ago

tanwei123456 commented 1 year ago

Dear author, now I obtained 2000 single-copy gene trees of genomes from 9 species using Orthofinder software. Can single-copy gene trees be used as the input of QuIBL? I am looking forward to your reply. Thank you very much！

qdu-beep commented 1 month ago

Dear author, now I obtained 2000 single-copy gene trees of genomes from 9 species using Orthofinder software. Can single-copy gene trees be used as the input of QuIBL? I am looking forward to your reply. Thank you very much！

Hi，tanwei I would like to ask you if you know if it is possible to use single copy gene trees as input to QUIBL? Is it common to use SNP information calculated by sliding window method to build trees? If you can provide some help, I would be grateful！ Qiao