@miriammiyagi @nbedelman hi, I meet this problem when running QuIBL.py, could you help me to solve it
/home/tuxl/software/QuIBL-master/QuIBL.py:119: RuntimeWarning: invalid value encountered in double_scalars
xq=[l/sum(xq) for l in xq]#xq/sum(xq)
/home/tuxl/software/QuIBL-master/QuIBL.py:109: RuntimeWarning: overflow encountered in exp
y=np.sinh(x/lmbd)/(lmbd(-1+np.exp(C)))
/home/tuxl/software/QuIBL-master/QuIBL.py:107: RuntimeWarning: overflow encountered in exp
y=0.5/lmbdnp.exp(-x/lmbd)(1+np.exp(C))
/home/tuxl/software/QuIBL-master/QuIBL.py:107: RuntimeWarning: invalid value encountered in double_scalars
y=0.5/lmbdnp.exp(-x/lmbd)*(1+np.exp(C))
Traceback (most recent call last):
File "/home/tuxl/software/QuIBL-master/QuIBL.py", line 338, in
inputReader(sys.argv[1])
File "/home/tuxl/software/QuIBL-master/QuIBL.py", line 334, in inputReader
outputFormatter(outputDict,inputDict)
File "/home/tuxl/software/QuIBL-master/QuIBL.py", line 305, in outputFormatter
tripletSet=Parallel(n_jobs=num_cores)(delayed(PLexMax)(triple,K,lthresh,numsteps,gAScalar) for triple in trees)
File "/home/tuxl/software/anaconda3/envs/R/lib/python2.7/site-packages/joblib/parallel.py", line 1017, in call
self.retrieve()
File "/home/tuxl/software/anaconda3/envs/R/lib/python2.7/site-packages/joblib/parallel.py", line 938, in retrieve
raise exception.unwrap(this_report)
joblib.my_exceptions.JoblibValueError: JoblibValueError
@miriammiyagi @nbedelman hi, I meet this problem when running QuIBL.py, could you help me to solve it
/home/tuxl/software/QuIBL-master/QuIBL.py:119: RuntimeWarning: invalid value encountered in double_scalars xq=[l/sum(xq) for l in xq]#xq/sum(xq) /home/tuxl/software/QuIBL-master/QuIBL.py:109: RuntimeWarning: overflow encountered in exp y=np.sinh(x/lmbd)/(lmbd(-1+np.exp(C))) /home/tuxl/software/QuIBL-master/QuIBL.py:107: RuntimeWarning: overflow encountered in exp y=0.5/lmbdnp.exp(-x/lmbd)(1+np.exp(C)) /home/tuxl/software/QuIBL-master/QuIBL.py:107: RuntimeWarning: invalid value encountered in double_scalars y=0.5/lmbdnp.exp(-x/lmbd)*(1+np.exp(C)) Traceback (most recent call last): File "/home/tuxl/software/QuIBL-master/QuIBL.py", line 338, in
inputReader(sys.argv[1])
File "/home/tuxl/software/QuIBL-master/QuIBL.py", line 334, in inputReader
outputFormatter(outputDict,inputDict)
File "/home/tuxl/software/QuIBL-master/QuIBL.py", line 305, in outputFormatter
tripletSet=Parallel(n_jobs=num_cores)(delayed(PLexMax)(triple,K,lthresh,numsteps,gAScalar) for triple in trees)
File "/home/tuxl/software/anaconda3/envs/R/lib/python2.7/site-packages/joblib/parallel.py", line 1017, in call
self.retrieve()
File "/home/tuxl/software/anaconda3/envs/R/lib/python2.7/site-packages/joblib/parallel.py", line 938, in retrieve
raise exception.unwrap(this_report)
joblib.my_exceptions.JoblibValueError: JoblibValueError
........................................................................... /home/tuxl/software/QuIBL-master/QuIBL.py in()
333 outputDict[flag]=config.get('Output',flag)
334 outputFormatter(outputDict,inputDict)
335
336
337 #print exMax(getTripBranches(readin_Newick(sys.argv[1])), 2, 0.01, 5, 0.5)[0].models
--> 338 inputReader(sys.argv[1])
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