Closed TS404 closed 4 years ago
plot_domain function now shows Nglc sites and signal peptides. Can't yet seem to add the relevant info to the legend. Will have to remind myself about that part of ggplot2!
I have added the scan_nglc
function to the package. I prefer scan
to predict
since no prediction is actually done, but rather the sequences are scanned for a motif. Since the occurrence of this motif was high I've added an (optional) argument (on by default) which checks the local hydrophilicity around the matched motif and if it is above a certain threshold then the found motif is TRUE
.
Thank you for the suggestion and initial code.
Good point. It's far more similar to scan_ag then it is to predict_hyp!
New basic analysis and plotting function to cluster sequences by their similarity of inter-proline distances
I've updated plot_domain with![image](https://user-images.githubusercontent.com/10216013/40212844-9613bfbc-5a95-11e8-96a7-c8240706bba6.png)
GPI
anchor potting as yellow circles.