Hi, when I use individual python code to run the analysis, I got below error:
Traceback (most recent call last):
File "/MToolBox/MToolBox/assembleMTgenome.py", line 10, in
from mtVariantCaller import mtvcf_main_analysis, get_consensus_single
File "/MToolBox/MToolBox/mtVariantCaller.py", line 15, in
import pandas as pd
ImportError: No module named pandas
However, I did not see any pandas issue when using MToolBox.sh. Please help with it., here is my code:
Hi, when I use individual python code to run the analysis, I got below error:
Traceback (most recent call last): File "/MToolBox/MToolBox/assembleMTgenome.py", line 10, in
from mtVariantCaller import mtvcf_main_analysis, get_consensus_single
File "/MToolBox/MToolBox/mtVariantCaller.py", line 15, in
import pandas as pd
ImportError: No module named pandas
However, I did not see any pandas issue when using MToolBox.sh. Please help with it., here is my code:
python2 /MToolBox/MToolBox/assembleMTgenome.py -i OUT2.sam -o ${outhandle} -r /MToolBox/genome_fasta/ -f chrM.fa -a hg19RCRS.fa -s /MToolBox/bin/samtools-1.3/samtools -v 1.3; cd ..; done > logassemble.txt
Thanks