no *annotation.csv after using variants_functional_annotation.py

mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data

http://sourceforge.net/projects/mtoolbox/?source=navbar

GNU General Public License v3.0

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no *annotation.csv after using variants_functional_annotation.py #103

Open Pilibeibei opened 3 years ago

Pilibeibei commented 3 years ago

I successfully get the mt_classification_best_results.csv, but when I use variants_functional_annotation.py, I don't have the output file "*annotation.csv"

my code is python2 /mtoolbox/1.2.1/MToolBox/variants_functional_annotation.py

Below is the log: Parsing pathogenicity table... Parsing variability data... Parsing info about haplogroup-defining sites... Parsing info about haplogroup assignments...

Please help. Thanks