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mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data
http://sourceforge.net/projects/mtoolbox/?source=navbar
GNU General Public License v3.0
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GT format in MToolBox VCF to make this compatible with downstream tools #52

Closed clody23 closed 5 years ago

clody23 commented 6 years ago

More "homogeneous" genotype definition: add new option to return haploid (or diploid) genotypes in the MToolBox VCF file

or

Keep the VCF as it is now but integrate filter_HF.py into the pipeline to generate a new VCF file with HF annotated and compatible with downstream tools

clody23 commented 5 years ago

I found out this is actually compatible with bcftools.