why is there no HF information and reference sequence for the prioritized variants file??

mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data

http://sourceforge.net/projects/mtoolbox/?source=navbar

GNU General Public License v3.0

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why is there no HF information and reference sequence for the prioritized variants file?? #66

Closed Confurious closed 5 years ago

Confurious commented 6 years ago

As the final output file, I would expect it to contain ref allele as well as HF which are included in the VCF and/or annotation.csv file. I consider them to be essential in pooling the results together for big cohort studies. Would it be possible to add these two columns to the prioritized_variants.txt ?

Thanks!

clody23 commented 5 years ago

Hi,

We are planning a MToolBox code refactoring where the prioritization file will likely disappear, in favour of fewer and clearer outputs.
I am afraid this is not going to be a further enhancement that we plan to do with future updates of the tool.

best, C