bug in prioritized_variants.py

[psterk]

Variant prioritization fails when "NA" is encountered, which throws the following error:

prioritization.py priority_tmp.txt Traceback (most recent call last):   File "/path/to/MToolBox/MToolBox/prioritization.py", line 42, in     tmp[3]=float(tmp[3]) ValueError: could not convert string to float: NA

I am a bit surprised that this has not been reported before, as I have come across it during the analysis of two datasets I have. I have written a quick hack in my local installation:

prio=[] for k in dic_var_sam2: samples=dic_var_sam2[k] tmp=[k,samples] tmp.extend(clean[k][1:])

start hack

    if tmp[3] == "NA":
            tmp[3] = 555 # ridiculous number, instantly recognizable in output                                                                                                                                            
   # end hack
    tmp[3]=float(tmp[3])
    prio.append(tmp)

[dwuab]

I have just encountered the same error.