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mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data
http://sourceforge.net/projects/mtoolbox/?source=navbar
GNU General Public License v3.0
90 stars 38 forks source link

java command not found #91

Closed EricDeveaud closed 3 years ago

EricDeveaud commented 4 years ago

related to #88

so if I understand corectly the algorithm is the following

if not java => success # and let script die later instead of stopping it rigth now

regards

Eric

clody23 commented 3 years ago

Dear Eric,

we are really sorry for this and we understand that error handling of the pipeline could be improved. Unfortunately MToolBox maintenance is not a full time job for any of us, so we struggle with keeping up with all the fixes and improvements due to lack of time.

However, instead of a sarcastic comment, it would be helpful that users that spot these bugs like in this case sand us for example a pull request to fix the issue, rather than these kind of comments. This is not really useful to us, nor to the rest of the users.

I am sorry but I will close your issue.

Best wishes, Claudia