BrenKenna
commented
4 years ago Just to extend this, if I add my local directory I get a "try running modprobe fuse" error. This is the same message I get when I try to install & run fusera mount within an AWS-batch job.
I know there is a dbGaP AMI image, but for whatever reason my jobs never move past the "RUNNABLE" state even though the instances are spun up. The OS's are the same if I use "amazon:linux" and my jobs move through the states fine, but always crash with the "modprobe fuse" error even after installing it and running it.
Run fusera mount
sudo docker run -v /home/ec2-user/:/home/ec2-user/ b22c00f65c8b fusera mount -n ${key} -a ~/testing.txt ~/TOPMed_test/ > ~/TOPMed-Test-Mounting.log 2>&1 & [2] 19086
Print log
cat ~/TOPMed-Test-Mounting.log stderr: fusermount: fuse device not found, try 'modprobe fuse' first
Hi,
I'm trying use your docker within a aws-batch job, but I keep getting key not found error (the key does exist). Below is what I'm running and snippet from the error.
Pull image
sudo docker pull fusera/fusera:alpine
Setup mounting directory and list samples to mount
mkdir -p ~/TOPMed_test/ echo -e "SRR6769030\nSRR6769027\nSRR6769028\nSRR6769029" > ~/testing.txt
Mount data
key=$(ls ~/*ngc) sudo docker run b22c00f65c8b fusera mount -d -n ${key} -a ~/testing.txt ~/TOPMed_test/ > ~/TOPMed-Test-Mounting.log 2>&1 &
Print log file
cat ~/TOPMed-Test-Mounting.log DEBUG 2020/04/23 10:58:19 errors.go:48: couldn't open ngc file at: /home/ec2-user/prj_XXXXX.ngc: open /home/ec2-user/prj_XXXX.ngc: no such file or directory