issues
search
mitre
/
fusera
A FUSE interface to the NCBI Sequence Read Archive (SRA)
Apache License 2.0
29
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
sracp progress printout is some times inaccurate
#122
mattrbianchi
opened
6 years ago
0
Fix metadata batch
#121
mattrbianchi
closed
6 years ago
0
Add batch of 2k to metadata calls
#120
mattrbianchi
closed
6 years ago
0
Fusera still mounts if all accessions fail
#119
mattrbianchi
closed
6 years ago
0
Fusera shows no folders when location is faulty
#118
mattrbianchi
closed
6 years ago
1
failed to locate accessions: API returned no accessions
#117
gversmee
closed
6 years ago
0
fusera with native URLs
#116
saulakravitz
closed
6 years ago
0
fusera 0.0.8 and CWL
#115
saulakravitz
closed
6 years ago
1
running with -a and a large list of accessions (5077) doesn't work
#114
saulakravitz
closed
6 years ago
2
-ngc does not work (-n works)
#113
saulakravitz
closed
6 years ago
1
Simplify dockerfile
#112
mattrbianchi
closed
6 years ago
0
Refactor nr pkg to become sdl pkg
#111
mattrbianchi
closed
6 years ago
0
Long list of Accessions in command line --> error
#110
saulakravitz
closed
6 years ago
0
document how to launch fusera through vm orchestration on GCP and AWS
#109
mattrbianchi
closed
6 years ago
0
Fusera in Daemon Mode
#108
saulakravitz
closed
6 years ago
0
Add a fusera docker image to docker hub
#107
mattrbianchi
closed
6 years ago
0
have unmount command only attempt to unmount fusera by checking for .initialized file
#106
mattrbianchi
opened
6 years ago
0
Use cobra
#105
mattrbianchi
closed
6 years ago
0
Conduct a refactoring of fusera
#104
mattrbianchi
closed
6 years ago
0
Add eager flag that signs urls on start up
#103
mattrbianchi
closed
6 years ago
0
Make an easy one step way of installing fusera and sracp
#102
mattrbianchi
closed
6 years ago
0
update fusera and sracp to use type query argument with the Name Resolver API
#101
mattrbianchi
closed
6 years ago
1
document issues with docker and fuse
#100
mattrbianchi
closed
6 years ago
0
Ask for identity when dealing with ftp urls to avoid gzipping
#99
mattrbianchi
closed
6 years ago
1
Update fusera to use the new Name Resolver API features
#98
mattrbianchi
closed
6 years ago
0
Combine acc-file and acc flags into one accession flag
#97
mattrbianchi
closed
6 years ago
0
Fusera should stop attempting to validate cloud regions in loc flag, as these could change.
#96
mattrbianchi
closed
6 years ago
0
Fusera doesn't allow urls to s3 or gcp for acc-file location
#95
mattrbianchi
closed
6 years ago
0
Documentation: Room for confusion about fusera startup
#94
saulakravitz
closed
6 years ago
1
Add tests around fusera to encourage contributing and code quality
#93
mattrbianchi
opened
6 years ago
0
Correct comparison of location prefix
#92
mattrbianchi
closed
6 years ago
0
customizing batch not actually working
#91
mattrbianchi
closed
6 years ago
0
Add a single retry request to failed batch calls
#90
mattrbianchi
closed
6 years ago
0
Change help to reflect proper defaults for batch
#89
mattrbianchi
closed
6 years ago
0
correct the help printout where it incorrectly states the batch defaults are 0
#88
mattrbianchi
closed
6 years ago
0
Create a .stat file that contains the statistics of the mounted file system
#87
mattrbianchi
closed
6 years ago
0
Fusera still mounts when there is an issue with the folder it's trying to mount to
#86
mattrbianchi
closed
6 years ago
0
Add a retry to the batch requests in the nr package
#85
mattrbianchi
closed
6 years ago
0
Include the accessions that failed in a batch request when getting a 500 internal server error
#84
mattrbianchi
closed
6 years ago
0
Check that file urls are valid by using them to perform HTTP HEAD calls
#83
mattrbianchi
closed
6 years ago
0
Swap the use of urfave/cli with cobra for parsing command line flags/args and env vars
#82
mattrbianchi
closed
6 years ago
0
fusera and sracp need to both understand and handle gzipped data appropriately
#81
mattrbianchi
closed
6 years ago
0
sracp needs to stop using the external cURL tool to download files
#80
mattrbianchi
closed
6 years ago
1
Update API endpoint
#79
mattrbianchi
closed
6 years ago
0
Gracefully handle a failure to resolve location
#78
gkelly
closed
6 years ago
0
Add Dockerfile
#77
gkelly
closed
6 years ago
1
Behave like cp by copying over existing files
#76
mattrbianchi
closed
6 years ago
0
Batch requests to the Name Resolver API
#75
mattrbianchi
closed
6 years ago
0
error log files for errors in accessions
#74
mattrbianchi
closed
6 years ago
0
fusera does not account for the expiration date after the first expiration happens
#73
hatimkhan
closed
6 years ago
3
Previous
Next