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mitreac / b575f19

UM DCMB BIOINF 575 Fall 2019 class repo
BSD 3-Clause "New" or "Revised" License
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HW_4 `conda install bamnostic` not working as expected #10

Open CooperStansbury opened 5 years ago

CooperStansbury commented 5 years ago

There are environment resolution issues with the current release of Anaconda (circa 4.6.11)(SEE THIS ISSUE), which makes installing bamnostic annoying using the following command:

conda install bamnostic

Suggestions for solving:

  1. Create a virtual environment. This makes resolution easier. See THIS for info.
  2. Downgrade conda. See this StackOverflow post.
  3. Use pip. You can install bamnostic using this command. NOTE: This does not resolve package dependencies and might create headaches later, but it will work. 
python3 -m pip install bamnostic
CooperStansbury commented 5 years ago

@betteridiot @mitreac

I think this can be marked as resolved. Thoughts?

mitreac commented 5 years ago

I think it can. Thank you Cooper for posting this.