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mittinatten / freesasa

C-library for calculating Solvent Accessible Surface Areas
http://freesasa.github.io/
MIT License
105 stars 37 forks source link

Installation issue #44

Closed sjkdenny closed 5 years ago

sjkdenny commented 5 years ago

Thanks for this great package. I'm having trouble installing. On a MacOS Mojave 10.14.3, the ./configure command gives the following error:

checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... configure: error: in /Volumes/GoogleDrive/My Drive/software/freesasa-2.0.2': configure: error: cannot run C compiled programs. If you meant to cross compile, use--host'. See `config.log' for more details

I've attached my config.log file. Thanks for your help! config.log

mittinatten commented 5 years ago

Hi! Seems to be a problem with file permissions, you are not alllowed to execute the test-file that configure produces. Do you have execution permissions in the directory you are building in?

tors 14 mars 2019 kl. 22:56 skrev sjkdenny notifications@github.com:

Thanks for this great package. I'm having trouble installing. On a MacOS Mojave 10.14.3, the ./configure command gives the following error:

checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... configure: error: in /Volumes/GoogleDrive/My Drive/software/freesasa-2.0.2': configure: error: cannot run C compiled programs. If you meant to cross compile, use --host'. See `config.log' for more details

I've attached my config.log file. Thanks for your help! config.log https://github.com/mittinatten/freesasa/files/2968619/config.log

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sjkdenny commented 5 years ago

You are right, it works when I move the directory out of my google file stream. Thanks for your help!

sjkdenny commented 5 years ago

Again thanks for your quick reply earlier. Unfortunately, I'm still running into trouble. I now have the error "Library libxml2 not found:". I have tried installing the libxml2 library three different ways. 1) using conda (https://github.com/conda-forge/libxml2-feedstock), and while it shows up in my list of conda packages, the error continues to be thrown during the ./configure step, so perhaps this is an issue with conda? 2) Through http://xmlsoft.org/downloads.html. Their ftp server is broken and so I can't download, and downloading the MacOS binaries through one of their links only has the libxml, not the libxml2. 3) I downloaded from their git page, but they do not have a 'configure' file. The first step of their installation instructions was to run ./configure, so I'm scratching my head. Would your package still work without the libxml2 package? Do you ha config.log ve any other advice? Thanks for your help. I attached my config.log just in case.

mittinatten commented 5 years ago

Glad to help! You can build it without libxml using ./configure —disable-xml. The same for json (—disable-json).

fre 15 mars 2019 kl. 22:44 skrev sjkdenny notifications@github.com:

Again thanks for your quick reply earlier. Unfortunately, I'm still running into trouble. I now have the error "Library libxml2 not found:". I have tried installing the libxml2 library three different ways. 1) using conda (https://github.com/conda-forge/libxml2-feedstock), and while it shows up in my list of conda packages, the error continues to be thrown during the ./configure step, so perhaps this is an issue with conda? 2) Through http://xmlsoft.org/downloads.html. Their ftp server is broken and so I can't download, and downloading the MacOS binaries through one of their links only has the libxml, not the libxml2. 3) I downloaded from their git page, but they do not have a 'configure' file. The first step of their installation instructions was to run ./configure, so I'm scratching my head. Would your package still work without the libxml2 package? Do you ha config.log https://github.com/mittinatten/freesasa/files/2973027/config.log ve any other advice? Thanks for your help. I attached my config.log just in case.

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sjkdenny commented 5 years ago

success! thank you.

mittinatten commented 5 years ago

Good to hear!