miwipe / ngsLCA

GNU General Public License v3.0
9 stars 5 forks source link

Kaiju output file style #27

Closed miwipe closed 1 year ago

miwipe commented 2 years ago

Make ngsLCA output as Kaiju output file style (https://github.com/bioinformatics-centre/kaiju) that gives you the counts only for the lowest ranks, rather than Kraken2 or Metaphaln that sum up the counts to the highest ranks.

Which is compatible with Phyloseq (https://joey711.github.io/phyloseq/) and Mia (https://microbiome.github.io/OMA/).

ont_otu_table.csv