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mixOmicsTeam / mixOmics

Development repository for the Bioconductor package 'mixOmics '
http://mixomics.org/
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All Pull Requests failing on vignette.Rmd #169

Closed Max-Bladen closed 2 years ago

Max-Bladen commented 2 years ago

🐞 Describe the bug: When GitHub action checks are running, everytime the build fails with the following raised error:

Quitting from lines 454-456 (vignette.Rmd) Error: processing vignette 'vignette.Rmd' failed with diagnostics: length(class2) == 1L is not TRUE --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’

The lines correspond to a code chuck which calls plotLoadings() on a pca object. There is likely an issue somewhere here.

🤔 Expected behavior:

For the vignette.Rmd to pass on in the build stage

💡 Possible solution:

Not sure, going to explore what could be causing it now.

Max-Bladen commented 2 years ago

As determined in PR #173 and rectified in PR #174, this was not an issue with vignette.Rmd but rather the fact that the GH Action checks were utilising the devel builds of R and BioConductor.