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mixOmicsTeam / mixOmics

Development repository for the Bioconductor package 'mixOmics '
http://mixomics.org/
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Build failing due to `vignette.Rmd` #224

Closed Max-Bladen closed 2 years ago

Max-Bladen commented 2 years ago

🐞 Describe the bug:

Every time package is built locally or remotely, it fails. This is due to the vignette.Rmd. In particular, MyResult.diablo2 <- block.plsda(X, Y) fails due to argument of length zero.

🔍 reprex results from reproducible example including sessioninfo():

Not reprex, but the error that is raised:

Quitting from lines 1275-1276 (vignette.Rmd)
   Error: processing vignette 'vignette.Rmd' failed with diagnostics:
   argument is of length zero
   --- failed re-building 'vignette.Rmd'

   SUMMARY: processing the following file failed:
     'vignette.Rmd'

   Error: Vignette re-building failed.
   Execution halted

🤔 Expected behavior:

For vignette.Rmd to properly knit as part of build process

💡 Possible solution:

This file has been a source of error previously. Could just be this particular line of code (which would be odd as running it in a terminal raises no error) or another more general issue (eg dependency problem).

Max-Bladen commented 2 years ago

Misidentified shortcoming of commit 6c5467d as a previously encountered error with vignette.Rmd. This issue is irrelevant.