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mixOmicsTeam / mixOmics

Development repository for the Bioconductor package 'mixOmics '
http://mixomics.org/
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Extraction of dendrogram feature order #308

Open tkapello opened 3 months ago

tkapello commented 3 months ago

Dear mixOmics team,

I have run cim() and would like to extract the order of the features on the heatmap. I tried to re-run the function but could not succeed. Could you help?

Thank you in advance.

LafontRapnouilTristan commented 1 week ago

Hi,

I've done it myself by assigning the output of cimDiablo to an object sayed_object. You can then access row and column order (which are clustered) via sayed_object$row.names and sayed_object$col.names. Hope it helped, Cheers