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mixOmicsTeam / mixOmics

Development repository for the Bioconductor package 'mixOmics '
http://mixomics.org/
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mixOmics in container #309

Open chenyanniii opened 4 months ago

chenyanniii commented 4 months ago

Hello, I'm trying to use the mixOmics inside container.

  1. I build the apptainer container from your docker images. apptainer build --fakeroot mixOmics.sif docker://mixomicsteam/mixomics:github

  2. I load the initiate the shell and run R inside. When I try to load the R packages, R can load my local packages, but failed to load mixOmics from the container.

  3. Overall, I can't neither identify packages location nor load the packages inside (attached a screenshot). Please give me some directions. Thank you.

Screenshot 2024-06-27 at 9 31 36 AM

evaham1 commented 1 month ago

Hi @chenyanniii , I've just tried pulling and the mixOmics image from Dockerhub (mixomicsteam/mixomics) using docker desktop and running library(mixOmics) loads the mixOmics package without problems on my system. Perhaps try pulling and downloading the mixOmics image from dockerhub (https://hub.docker.com/r/mixomicsteam/mixomics) using command line or docker desktop? Let me know if that works for you!