Revert ANTs installation to Neurodocker

miykael / fmriflows

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

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Revert ANTs installation to Neurodocker #7

Closed miykael closed 6 years ago

miykael commented 6 years ago

Resets the installation of ANTs back to Neurodocker's installation with version 2.2.0. It turns out that the strange results shown in https://github.com/miykael/fmriflows/pull/5 are actually caused by the interpolation type LanczosWindowedSinc. I therefore reset this parameter back to the default Linear.

This PR also increases the accuracy of the normalization, by increasing the registration parameters. As a consequence, the normalization step will take 2-4 times as before.

miykael commented 6 years ago

This is all fine and only creates a small error in the plotting function in the "1st-level" notebook. Will take care of this with another PR.