search

miykael / gif_your_nifti

How to create fancy GIFs from an MRI brain image
BSD 3-Clause "New" or "Revised" License
118 stars 31 forks source link

Error #7

Closed abiring closed 4 years ago

abiring commented 4 years ago

Hi ! hope you are fine . Can u help me in solving ths problem

gif_your_nifti '/home/abir/Bureau/data/training/patient028/patient028_4d.nii'
Traceback (most recent call last):
  File "/usr/local/bin/gif_your_nifti", line 11, in <module>
    load_entry_point('gif-your-nifti==0.2.0', 'console_scripts', 'gif_your_nifti')()
  File "/home/abir/.local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 489, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/home/abir/.local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2852, in load_entry_point
    return ep.load()
  File "/home/abir/.local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2443, in load
    return self.resolve()
  File "/home/abir/.local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2449, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "build/bdist.linux-x86_64/egg/gif_your_nifti/__main__.py", line 5, in <module>
  File "build/bdist.linux-x86_64/egg/gif_your_nifti/core.py", line 4, in <module>
  File "/usr/local/lib/python2.7/dist-packages/nibabel-3.1.0-py2.7.egg/nibabel/__init__.py", line 40, in <module>
    from . import analyze as ana
  File "/usr/local/lib/python2.7/dist-packages/nibabel-3.1.0-py2.7.egg/nibabel/analyze.py", line 935
    def from_file_map(klass, file_map, *, mmap=True, keep_file_open=None):
                                        ^
SyntaxError: invalid syntax
ofgulban commented 4 years ago

Hi @abiring , thanks for the error report. I see that you are using Python2.7. Can you try it with Python3 environment? Python 2.7 is not supported anymore so maybe some of our dependencies are causing trouble because of this.

abiring commented 4 years ago

hello yes it's work thanks . I 'm working on MRI cardiac is it possible to modify the axis of representation of MRI so that it is clearer ?

ofgulban commented 4 years ago

Good to hear that it works! I think the best way to go about modifying the axes is to reorient the image beforehand (e.g. using nibabel). We did not implement such functionality in our command line interface. I was thinking about implementing this this but it will probably happen sometime later in the year.

abiring commented 4 years ago

oky thank u so much