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miykael / parcellation_fragmenter

Fragments FreeSurfer parcellation annotation in N-equal sized parcels
BSD 3-Clause "New" or "Revised" License
27 stars 11 forks source link

Pretty much working fully. #25

Closed kristianeschenburg closed 6 years ago

kristianeschenburg commented 6 years ago

Added "write" method in Fragment to save fragmented label to new annotation file, added details to RegionExtractor docstring, started working on GH-pages site.

Where do you want to host the page?

miykael commented 6 years ago

@kristianeschenburg - Wow! Thank you for all this. I have only one correction. The Demo.ipynb notebook is currently 35MB big, because of the interactive figures. Those figures are not kept if you download the notebook again and will with time make this repo huge! Therefore, could you please upload the notebook again but with the output cells cleared?

miykael commented 6 years ago

Concerning the installation process. The installation currently requires git clone and than pip install. Is there a reason why we don't put it on PyPi and make the installation something like pip install parcellation_fragmenter?

miykael commented 6 years ago

I have no preference for where to host the page? I usually use the github pages but if you want to setup a readthedocs or something similiar. I'm also happy with that.

miykael commented 6 years ago

The content is good to go, therefore I will already merge this PR.