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miykael / workshop_pybrain

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Workshop Schedule #4

Closed miykael closed 3 years ago

miykael commented 3 years ago

Hi @peerherholz,

I'm trying to figure out the best schedule for the workshop, so that it's not overloaded nor too boring. But I'm still missing a few puzzle pieces. See here:

General thoughts

Program Suggestion

Day 1 - Monday, 9th November

Morning - @miykael

Afternoon - @peerherholz

Day 2 - Tuesday, 10th November

Morning - @miykael

Afternoon - @peerherholz

Comments

Like this the first three half-days would work nicely, but the last afternoon is too packed (i.e. 3h instead of 2.5h). My potential solutions are:

What are your thoughts? It's all still very dense. But I personally believe that it gives the participants a lot of content to go back to later. Nonetheless, it might be worth it to drop some stuff in the slides or notebooks.

PeerHerholz commented 3 years ago

Ahoi hoi @miykael,

thanks a lot for this! The basics: I'll try to join around 12:30 PM workshop time zone, thus can't really help re everything before in terms of active involvement during the workshop. I mean I could (with a lot of coffee), if needed.

LMKWYT

miykael commented 3 years ago

No worries about not joining in the morning. First morning is anyhow intro and second is Nipype. So all fine for me. My point was more, don't hesitate to tell me if you want to give me some things in the afternoon. Happy to switch it a bit if you'd like (or also to lay back ;-))

PeerHerholz commented 3 years ago

Coolio, I think we're getting closer!

miykael commented 3 years ago

I've updated the program (see here on nbviewer. I made everything more color full (which is hopefully useful, but let me know if glows like a Christmas tree).

I haven't cleaned out the slides or notebooks yet, but I gave each half day 3-4 sections, what do you think?

Schedule - Day 1

Schedule - Day 2

miykael commented 3 years ago

To your previous comments:

  1. I dropped Keras and PyMVPA. I will explore another deep learning model (using pretrained 3D-RESNET that I saw already in Keras challenges), but I might drop them as I'm not expert in them.
  2. What do you mean with ROI decoding example? Searchlight or something else?
  3. You're right, python recap can be shortened to 30min. Many people will already know it or have taken the previous workshop 👍
  4. To familiarize myself again with the slides I wanted to give them a quick look. I might also adapt a few (like the Python recap), but yes. They can mostly stay the same. I'm ok with conversion to google slides. Is there a quick way to do this?
  5. With nimare and brainspace, be my guest. I think we still have time to develop things.

What I would like to fix asap is a timetable, so that it can also be communicated to learners. Similar to the first workshop here.

PeerHerholz commented 3 years ago

Cool, thx!

  1. sounds about right.

  2. e.g. can we decode faces vs. houses in the PPA? here, we could include permutation tests as well.

  3. cool.

  4. I think now, one would have to go through the slides and adapt them. However, I'll check that.

  5. Ok, I'll look into it.

I think the one you outlined above could be shared, no?

miykael commented 3 years ago

Perfect, yes. I will share this with the organizers. The Docker installation instructions were also updated and so everything should be good to go. Notebooks and slides can be changed for quite some time, everything is updated with a quick docker pull.

With respect to "2. e.g. can we decode faces vs. houses in the PPA? here, we could include permutation tests as well." Do you have any specific pointers or code snippets? Happy to flesh it out if need be, but I'm not sure what you're pointing at :-)

PeerHerholz commented 3 years ago

Re ROI decoding I was referring to this example. I'll add further stuff in the other issue.

miykael commented 3 years ago

Issue can be closed, ROI decoding will be integrated with the next commit.