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mjsull / Easyfig

Development version of Easyfig
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Strategy to run Easyfig: Ubuntu 20.04 #40

Open ghost opened 3 years ago

ghost commented 3 years ago

Hello,

I was trying to run Easyfig on Ubuntu 20.04 LTS but I had many problems

a) BLAST+ was not working well b) I was not having output files c) Stopped moments after starting

So this is what I did:

1) I downloaded my .gb and the .fasta files from GenBank 2) I manually downloaded the .csv file (Hit table) from BLASTn 3) I took the .csv file and converted to .tsv in https://onlinecsvtools.com/convert-csv-to-tsv 4) I added the .gb files to Easyfig and manually added the .tsv files 5) It finally gave me an output

I hope this can help!

davidmadariaga commented 3 years ago

hi, im having some similar issues. How can i download the hit table?

ghost commented 3 years ago

Hey @davidmadariaga This is how I do it

  1. Use the .fasta files to BLASTn the genomes (option: align two o more sequences)
  2. In the description tab you will see a download button
  3. Click there and then download the Hit table CSV (see image)
  4. Then proceed with the other steps

imagen